RNA Secondary Structure

RNA secondary structures: complex statics and glassy dynamics

Mathematical Physics / Statistical Mechanics / Monte Carlo Simulation / Monte Carlo / Neural Network / Complex System / Classical Physics / State Space / Phase Space / Transfer Matrix Method / Finite Temperature / RNA Secondary Structure / Thermodynamic Properties / Monte Carlo Method / Critical Temperature / Complex Dynamics / Complex System / Classical Physics / State Space / Phase Space / Transfer Matrix Method / Finite Temperature / RNA Secondary Structure / Thermodynamic Properties / Monte Carlo Method / Critical Temperature / Complex Dynamics

Design of siRNAs producing unstructured guide-RNAs results in improved RNA interference efficiency

Algorithms / Thermodynamics / RNA / Biotechnology / RNA silencing / Multidisciplinary / Gene Silencing / Nature / RNA interference / Cell line / Humans / Plasmids / microRNAs / Secondary Structure / Degeneration / RNA Structure / Structure Determination / RNA Secondary Structure / Nucleic Acid Conformation / Nucleotides / Multidisciplinary / Gene Silencing / Nature / RNA interference / Cell line / Humans / Plasmids / microRNAs / Secondary Structure / Degeneration / RNA Structure / Structure Determination / RNA Secondary Structure / Nucleic Acid Conformation / Nucleotides

Comparing RNA secondary structures using a relaxed base-pair score

Algorithms / Thermodynamics / RNA / Computational Biology / Stochastic processes / Phylogeny / Humans / Cluster Analysis / RNA Secondary Structure / Nucleic Acid Conformation / Biochemistry and cell biology / Phylogeny / Humans / Cluster Analysis / RNA Secondary Structure / Nucleic Acid Conformation / Biochemistry and cell biology

Design of siRNAs producing unstructured guide-RNAs results in improved RNA interference efficiency

Algorithms / Thermodynamics / RNA / Biotechnology / RNA silencing / Multidisciplinary / Gene Silencing / Nature / RNA interference / Cell line / Humans / Plasmids / microRNAs / Secondary Structure / Degeneration / RNA Structure / Structure Determination / RNA Secondary Structure / Nucleic Acid Conformation / Nucleotides / Multidisciplinary / Gene Silencing / Nature / RNA interference / Cell line / Humans / Plasmids / microRNAs / Secondary Structure / Degeneration / RNA Structure / Structure Determination / RNA Secondary Structure / Nucleic Acid Conformation / Nucleotides

Conserved RNA secondary structures promote alternative splicing

Algorithms / RNA / Gene expression / Protein Structure and Function / Humans / Sequence alignment / Animals / Alternative splicing / Genome Analysis / Site Selection / Human Genome / Alternative Splicing / RNA Structure / Base Sequence / RNA Secondary Structure / Nucleic Acid Conformation / Biochemistry and cell biology / Sequence alignment / Animals / Alternative splicing / Genome Analysis / Site Selection / Human Genome / Alternative Splicing / RNA Structure / Base Sequence / RNA Secondary Structure / Nucleic Acid Conformation / Biochemistry and cell biology
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